PUBLICATIONS

Journal publications

  1. Vucetic, S., Han, B., Mi, W., Li, Z., Obradovic, Z., A Data Mining Approach for the Validation of Aerosol Retrievals, IEEE Geoscience and Remote Sensing Letters, accepted.

  2. Krynetskaia, N., Xie, H., Vucetic, S., Obradovic, Z., Krynetskiy, E., High Mobility Group Protein B1 is an Activator of Apoptotic Response to Antimetabolite Drugs, Molecular Pharmacology, Published October 19, 2007; doi: 10.1124/mol.107.041764. (download)

  3. Xie, H., Vucetic, S., Iakoucheva, L.M., Oldfield, C.J., Dunker, A.K., Uversky, V.N., Obradovic, Z., Functional Anthology of Intrinsic Disorder. I. Biological Processes and Functions of Proteins with Long Disordered Regions, Journal of Proteome Research, Vol. 6 (5), pp. 1882 -1898, 2007. (download)

  4. Vucetic, S., Xie, H., Iakoucheva, L.M., Oldfield, C.J., Dunker, A.K., Obradovic, Z., Uversky, V.N., Anthology of Intrinsic Disorder. II. Cellular Components, Domains, Technical Terms, Developmental Processes and Coding Sequence Diversities Correlated with Long Disordered Regions, Journal of Proteome Research, Vol. 6 (5), pp. 1899 -1916, 2007. (download)

  5. Xie, H., Vucetic, S., Iakoucheva, L.M., Oldfield, C.J., Dunker, A.K., Obradovic, Z., Uversky, V.N., Functional Anthology of Intrinsic Disorder. III. Ligands, Postranslational Modifications and Diseases Associated with Intrinsically Disordered Proteins, Journal of Proteome Research, Vol. 6 (5), pp. 1917 -1932, 2007. (download)

  6. Han, B., Obradovic, Z., Hu, Z.Z., Wu, C. H., Vucetic, S., Substring Selection for Biomedical Document Classification, Bioinformatics, Vol. 22 (17), pp. 2136-2142, 2006. (download)

  7. Han, B., Vucetic, S., Braverman, A., Obradovic, Z., A Statistical Complement to Deterministic Algorithms for the Retrieval of Aerosol Optical Thickness from Radiance Data, Engineering Applications of Artificial Intelligence, Vol. 19, No. 7, pp. 787-795, 2006. (download)

  8. Peng, K., Radivojac, P., Vucetic, S., Dunker A.K, Obradovic, Z., Length-Dependent Prediction of Protein Intrinsic Disorder, BMC Bioinformatics, Vol. 7 (1), 208, 2006. (download)

  9. Radivojac, P., Vucetic, S., O'Connor, T.R., Uversky, V.N., Obradovic, Z., Dunker, A.K., Calmodulin Signaling: Analysis and Prediction of a Disorder-Dependent Molecular Recognition, Proteins: Structure, Function, and Bioinformatics, Vol. 63(2), pp. 398-410, 2006. (download)

  10. Obradovic, Z., Peng, K., Vucetic, S., Radivojac, P., Dunker A.K, Exploiting Heterogeneous Sequence Properties Improves Prediction of Protein Disorder, Proteins: Structure, Function, and Bioinformatics, Vol 61, Suppl 7, pp.176-82, 2005. (download)

  11. Vucetic, S., Obradovic, Z., Collaborative Filtering Using a Regression-Based Approach, Knowledge and Information Systems, Vol. 7, No. 1, pp. 1-22, 2005. (download)

  12. Peng, K.,  Vucetic, S., Radivojac, P., Brown, CJ, Dunker, AK., Obradovic, Z., Optimizing Long Intrinsic Disorder Predictors with Protein Evolutionary Information, Journal of Bioinformatics and Computational Biology, Vol 3, No. 1, pp. 35-60, 2005. (download) VL3, VL3H and VL3E Prediction Server Web site

  13. Vucetic, S., Obradovic, Z., Vacic, V., Radivojac, P., Peng, K., Iakoucheva, L.M., Lawson, J.D., Brown, C.J., Sikes, J.G., Newton, C., Dunker, A.K., DisProt: A Database of Protein Disorder, Bioinformatics, Vol. 21, No. 1, pp. 137-140, 2005. (download) DisProt Database Web site

  14. Radivojac, P., Obradovic, Z., Smith, D.K., Zhu, G., Vucetic, S., Brown, C.J., Lawson, J.D., Dunker, A.K., Protein Flexibility and Intrinsic Disorder, Protein Science, Vol. 13 No. 1, pp. 71-80, 2004. (download)

  15. Obradovic, Z., Peng, K., Vucetic, S., Radivojac, P., Brown C., Dunker A.K, Prediction of Intrinsic Protein Disorder, Proteins: Structure, Function and Genetics, Special Issue on CASP5, Vol. 53, Suppl 6, pp. 566-72, 2003. (download)

  16. Vucetic, S., Brown C., Dunker A.K and Obradovic, Z., Flavors of Protein Disorder, Proteins: Structure, Function and Genetics, Vol. 52, pp. 573-584, 2003. (download) VL2 Prediction Server Web site

  17. Vucetic, S., Tomsovic, K. and Obradovic, Z., Discovering Price-Load Relationships in California’s Electricity Market, IEEE Transactions on Power Systems, Vol. 16, No. 2, pp. 280-286, 2001. (download)

  18. Vucetic, S., Fiez, T. and Obradovic, Z., Examination of the Influence of Data Aggregation and Sampling Density on Spatial Estimation, Water Resources Research, Vol. 36, No. 12, pp. 3721-3731, 2000. (download)

Book chapters

  1. Xie, H., Midic, U., Vucetic, S., Obradovic, Z., Algorithmic Methods for the Analysis of Gene Expression Data, In A. Nayak and I. Stojmenovic, Editors, Handbook of Applied Algorithms: Solving Scientific, Engineering and Practical Problems, John Wiley & Sons, Inc, in press.

  2. Han, B., Obradovic, Z., Vucetic, S., Using Statistical Methods to Improve Efficiency and Accuracy of Aerosol Retrievals, in Advances in Applied and Computational Mathematics, Vol 2, Nova Science Publisher, in press.

  3. Peng, K., Obradovic, Z., Vucetic, S., Supervised Learning Under Sample Selection Bias from Protein Structure Databases, in Advances in Applied and Computational Mathematics, Nova Science Publisher, pp. 153-170, 2006.

  4. Obradovic, Vucetic, S., Challenges in Scientific Data Mining: Heterogeneous, Biased and Large Samples, In H. Kargupta, A. Joshi, K. Sivakumar, Y. Yesha, Editors, Data Mining: Next Generation Challenges and Future Directions, AAAI/MIT Press, pp. 381-401, 2004.

Conference/Workshop publications

  1. Wang, Z., Radosavljevic, V., Han, B., Obradovic, Z., Vucetic, S., Aerosol Optical Depth Prediction from Satellite Observations by Multiple Instance Regression, 2008 SIAM Conf. on Data Mining (SDM), Atlanta, GA, 2008. (download)

  2. Radosavljevic, V., Vucetic, S., Obradovic, Z., Spatio-Temporal Partitioning for Improving Aerosol Prediction Accuracy, 2008 SIAM Conf. on Data Mining (SDM), Atlanta, GA, 2008. (download)

  3. Radosavljevic, V., Vucetic, S., Obradovic, Z., Aerosol Optical Depth Retrieval by Neural Networks Ensemble with Adaptive Cost Function, 10th Int'l Conf. on Engineering Applications of Neural Networks (EANN), Thessaloniki, Greece, 2007. (download)

  4. Malbasa, V., Vucetic, S., A Reservoir Sampling Algorithm with Adaptive Estimation of Conditional Expectation, Proc. Int'l Joint Conf. on Neural Networks (IJCNN), Orlando, FL, 2007. (download)

  5. Obradovic, Z, Han, B., Xu, Q., Li, Y., Braverman, A., Li, Z., Vucetic, S. Data Mining Support for Aerosol Retrieval and Analysis - Project Summary, Second NASA Data Mining Workshop, Pasadena, CA, 2006.

  6. Vucetic, S,. Sun, H., Aggregation of Location Attributes for Prediction of Infection Risk, Workshop on Spatial Data Mining: Consolidation and Renewed Bearing, at the 2006 SIAM Conf. on Data Mining (SDM), Bethesda, MD, 2006. (download)

  7. Han,B., Obradovic, Z., Li, Z., Vucetic, S., Data Mining Support for Improvement of MODIS Aerosol Retrievals, IEEE International Geoscience and Remote Sensing Symposium 2006 (IGARSS), Denver, CO, 2006. (download)

  8. Vucetic, S., A Fast Algorithm for Lossless Compression of Data Tables by Reordering, Data Compression Conference (DCC), Snowbird, UT, 2006. (download)

  9. Xie, H., Obradovic, Z., Vucetic, S., Mining of Microarray, Proteomics, and Clinical Data for Improved Identification of Chronic Fatigue Syndrome, 6th International Conference for the Critical Assessment of Microarray Data Analysis (CAMDA 2006), Durham, NC, 2006. (download)

  10. Han, B., Vucetic, S., Braverman, A., Obradovic, Z., Construction of an Accurate Geospatial Predictor by Fusion of Global and Local Models, 8th Int’l Conf. on Information Fusion, Philadelphia, PA, 2005. (download)

  11. Xu, Q., Han, B., Li, Y., Braverman, A., Obradovic, Z., Vucetic, S., Improving Aerosol Retrieval Performance by Integrating AERONET, MISR, and MODIS Data Products, 8th Int’l Conf. on Information Fusion, Philadelphia, PA, 2005. (download)

  12. Han, B., Vucetic, S., Braverman, A., Obradovic, Z., Integration of Deterministic and Statistical Algorithms for Aerosol Retrieval, The 9th Int'l Conf. on Engineering Applications of Neural Networks (EANN), Lille, France, 2005. (download)

  13. Vucetic , S., Accuracy-Optimized Quantization for High-Dimensional Data Fusion, Data Compression Conference (DCC), Snowbird, Utah, 2005. (download)

  14. Peng, K., Vucetic, S., Obradovic, Z., Correcting Sampling Bias in Structural Genomics through Iterative Selection of Underrepresented Targets, 2005 SIAM Conf. on Data Mining (SDM), Newport Beach, CA, 2005. (download)

  15. Peng, K., Obradovic, Z., Vucetic, S., Towards Efficient Learning of Neural Network Ensembles from Arbitrarily Large Datasets, 16th European Conference on Artificial Intelligence (ECAI), Valencia, Spain, pp. 623-627, 2004. (download)

  16. Radivojac, P., Obradovic, Z., Dunker, AK, Vucetic, S., Characterization of Permutation Tests for Feature Selection, 15th European Conference on Machine Learning (ECML), Pisa, Italy, 2004. (download)

  17. Peng, K., Obradovic, Z., Vucetic, S., Exploring Bias in the Protein Data Bank Using Contrast Classifiers, Pacific Symposium on Biocomputing (PSB), Hawaii, pp. 435-446, 2004. (download)

  18. Peng, K., Vucetic, S., Han, B., Xie, X., Obradovic, Z., Exploiting Unlabeled Data for Improving Accuracy of Predictive Data Mining, 3rd IEEE Int'l Conf. on Data Mining (ICDM), Melbourne, FL, pp. 267-274, 2003. (download)

  19. Han, B., Vucetic, S., and Obradovic, Z.,  Reranking Medline Citations By Relevance to a Difficult Biological Query, IASTED Int'l Conf. Neural Networks and Computational Intelligence, Cancun, Mexico, 2003. (download)

  20. Vucetic, S., Pokrajac, D., Xie H. and Obradovic, Z., Detection of Underrepresented Biological Sequences Using Class-Conditional Distribution Models, 2003 SIAM Conf. on Data Mining (SDM), San Francisco, CA, pp. 179-283, 2003. (download)

  21. Dunker, A.K., Brown. C.J, Lawson, J.D., Iakoucheva-Sebat, L.M., Vucetic, S. and Obradovic, Z.,  The Protein Trinity: Structure/Function Relationships that Include Intrinsic Disorder, Proc. 2002 Miami Nature Biotechnology Winter Symp., Scientific World Journal, 2(S2), 49-50, 2002. (download)

  22. Vucetic, S. and Obradovic, Z., Classification on Data with Biased Class Distribution, 12th European Conference on Machine Learning (ECML), Freiburg, Germany, pp. 527-538, 2001. (download)

  23. Vucetic, S., Radivojac, P., Dunker, K., Brown, C., Obradovic, Z., Methods for Improving Protein Disorder Prediction, Int'l Joint Conf. on Neural Networks (IJCNN), Washington D.C. 2001. (download)

  24. Vucetic, S. and Obradovic, Z., A Regression-Based Approach for Scaling-Up Personalized Recommender Systems in E-Commerce, Workshop on Web Mining for E-Commerce, at the 6th ACM SIGKDD Int’l Conf. on Knowledge Discovery and Data Mining (KDD), Boston, MA, 2000. (download)

  25. Vucetic, S. and Obradovic, Z., Discovering Homogeneous Regions in Spatial Data through Competition, 17th Int'l. Conf. on Machine Learning (ICML) , pp. 1091-1098, Stanford, CA, 2000. (download)

  26. Vucetic, S. and Obradovic, Z., Performance Controlled Data Reduction for Knowledge Discovery in Distributed Databases, Pacific-Asia Conf. on Knowledge Discovery and Data Mining (PAKDD), Computer Science Editorial 3, Springer-Verlag, pp. 29-39, Kyoto, Japan, 2000. (download)

  27. Vucetic, S. and Obradovic, Z., A Constructive Competitive Regression Method for Analysis and Modeling of Non-stationary Time Series, 1st Int'l Workshop on Computational Intelligence in Economics and Finance, at the 5th Joint Int’l Conf. on Information Science, vol. 2, pp. 978-981, Atlantic City, NJ, 2000. (download)

  28. Vucetic, S., Fiez, T. and Obradovic, Z. A Data Partitioning Scheme for Spatial Regression, IEEE/INNS Int'l Conf. on Neural Neural Networks (IJCNN), Washington D.C., 1999. (download)

  29. Pokrajac, D., Lazarevic, A., Vucetic, S., Fiez T. and Obradovic Z., Image Processing in Precision Agriculture, IEEE Int'l Conf. on Telecommunications in Modern Satellite, Cable and Broadcasting Services, vol. 2, pp. 616-619, Nis, Yugoslavia, 1999.

  30. Vucetic, S., Senk, V., On the Branching Process Analysis of the Average Number of Computations of the Stack Algorithm, XLI Yugoslav Conf. on ETRAN, Zlatibor, June 1997.

  31. Radivojac, P., Vucetic, S., An Improved Trellis Code Search Procedure for Speech Compression, XLI Yugoslav Conf. on ETRAN, Zlatibor, June 1997.