Bibliography

This bibliography includes all the papers referenced by DisProt, papers that have cited several key references on disordered proteins, and additional papers found by key word searches. The list is sorted by the first author's last name. Click here to see the distribution per year of the papers in the bibliography.
Last update on June 23rd, 2006. Total number of papers in this bibliography: 2430.

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Naeem A, Fatima S, Khan RH. "Characterization of partially folded intermediates of papain in presence of cationic, anion and non-ionic detergents at low pH." Biopolymers. 2006. PMID: 16598711
 
Nagourney RA. "Ex vivo programmed cell death and the prediction of response to chemotherapy." Curr Treat Options Oncol. 2006; 7(2): 103-10. PMID: 16455021
 
Naik MT, Suree N, Ilangovan U, Liew CK, Thieu W, Campbell DO, Clemens JJ, Jung ME, Clubb RT. "Staphylococcus aureus Sortase A transpeptidase. Calcium promotes sorting signal binding by altering the mobility and structure of an active site loop." J Biol Chem. 2006; 281(3): 1817-26. PMID: 16269411
 
Nakagawa A, Nakashima T, Taniguchi M, Hosaka H, Kimura M, Tanaka I. "The three-dimensional structure of the RNA-binding domain of ribosomal protein L2; a protein at the peptidyl transferase center of the ribosome." Embo J. 1999; 18(6): 1459-1467. PMID: 10075918
 
Nakaji-Hirabayashi T, Endo H, Kawasaki H, Gemmei-Ide M, Kitano H. "Inclusion of bisphenols by a self-assembled monolayer of thiolated calix[6]arene on a gold surface." Environ Sci Technol. 2005; 39(14): 5414-20. PMID: 16082974
 
Nakamoto T. "A unified view of the initiation of protein synthesis." Biochem Biophys Res Commun. 2006; 341(3): 675-8. PMID: 16438936
 
Nakamura T, Hinagata J, Tanaka T, Imanishi T, Wada Y, Kodama T, Doi T. "HSP90, HSP70, and GAPDH directly interact with the cytoplasmic domain of macrophage scavenger receptors." Biochem Biophys Res Commun. 2002; 290(2): 858-64. PMID: 11785981
 
Nakanishi M, Robetorye RS, Adami GR, Pereira-Smith OM, Smith JR. "Identification of the active region of the DNA synthesis inhibitory gene p21Sdi1/CIP1/WAF1." Embo J. 1995; 14(3): 555-63. PMID: 7859744
 
Nakano M, Kasai K, Yoshida K, Tanimoto T, Tamaki Y, Tobita T. "Conformation of the fowl protamine, galline, and its binding properties to DNA." J Biochem (Tokyo). 1989; 105(1): 133-7. PMID: 2738040
 
Nakashima T, Kimura M, Nakagawa A, Tanaka I. "Crystallization and preliminary X-ray crystallographic study of a 23S rRNA binding domain of the ribosomal protein L2 from Bacillus stearothermophilus." J Struct Biol. 1998; 124(1): 99-101. PMID: 9931278
 
Nakayama J, Rice JC, Strahl BD, Allis CD, Grewal SI. "Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly." Science. 2001; 292(5514): 110-113. PMID: 11283354
 
Nakayama T, Fujiwara T, Miyazawa A, Asakawa S, Shimizu N, Shimizu Y, Mikoshiba K, Akagawa K. "Mapping of the human HPC-1/syntaxin 1A gene (STX1A) to chromosome 7 band q11.2." Genomics. 1997; 42(1): 173-176. PMID: 9177791
 
Nanasi PP, Jednakovits A. "Multilateral in vivo and in vitro protective effects of the novel heat shock protein coinducer, bimoclomol: results of preclinical studies." Cardiovasc Drug Rev. 2001; 19(2): 133-51. PMID: 11484067
 
Nanda V, DeGrado WF. "Computational design of heterochiral peptides against a helical target." J Am Chem Soc. 2006; 128(3): 809-16. PMID: 16417370
 
Nandi T, Dash D, Ghai R, BRao C, Kannan K, Brahmachari SK, Ramakrishnan C, Ramachandran S. "A novel complexity measure for comparative analysis of protein sequences from complete genomes." J Biomol Struct Dyn. 2003; 20(5): 657-68. PMID: 12643768
 
Nanduri V, Sorokulova IB, Samoylov AM, Simonian AL, Petrenko VA, Vodyanoy V. "Phage as a molecular recognition element in biosensors immobilized by physical adsorption." Biosens Bioelectron. 2006. PMID: 16730970
 
Napper CE, Drickamer K, Taylor ME. "Collagen binding by the mannose receptor mediated through the fibronectin type II domain." Biochem J. 2006. PMID: 16441238
 
Narayanaswamy R, Ellington AD. "Engineering RNA-based circuits." Handb Exp Pharmacol. 2006: 423-45. PMID: 16594629
 
Nardini M, Svergun D, Konarev PV, Spano S, Fasano M, Bracco C, Pesce A, Donadini A, Cericola C, Secundo F, Luini A, Corda D, Bolognesi M. "The C-terminal domain of the transcriptional corepressor CtBP is intrinsically unstructured." Protein Sci. 2006; 15(5): 1042-50. PMID: 16597837
 
Nash HA. "Topological nuts and bolts." Science. 1998; 279(5356): 1490-1491. PMID: 9508726
 
Nassar N, Horn G, Herrmann C, Block C, Janknecht R, Wittinghofer A. "Ras/Rap effector specificity determined by charge reversal." Nat Struct Biol. 1996; 3(8): 723-729. PMID: 8756332
 
Nassar N, Horn G, Herrmann C, Scherer A, McCormick F, Wittinghofer A. "The 2.2 A crystal structure of the Ras-binding domain of the serine/threonine kinase c-Raf1 in complex with Rap1A and a GTP analogue." Nature. 1995; 375(6532): 554-560. PMID: 7791872
 
Natarajan K, Sawicki MW, Margulies DH, Mariuzza RA. "Crystal structure of human CD69: a C-type lectin-like activation marker of hematopoietic cells." Biochemistry. 2000; 39(48): 14779-86. PMID: 11101293
 
Naud JF, McDuff FO, Sauve S, Montagne M, Webb BA, Smith SP, Chabot B, Lavigne P. "Structural and Thermodynamical Characterization of the Complete p21 Gene Product of Max." Biochemistry. 2005; 44(38): 12746-12758. PMID: 16171389 Pierre.Lavigne@Usherbrooke.ca
 
Nelson WD, Blakely SE, Nesmelov YE, Thomas DD. "Site-directed spin labeling reveals a conformational switch in the phosphorylation domain of smooth muscle myosin." Proc Natl Acad Sci U S A. 2005; 102(11): 4000-5. PMID: 15753305
 
Neri M, Anselmi C, Cascella M, Maritan A, Carloni P. "Coarse-grained model of proteins incorporating atomistic detail of the active site." Phys Rev Lett. 2005; 95(21): 218102. PMID: 16384187
 
Neuweiler H, Doose S, Sauer M. "A microscopic view of miniprotein folding: enhanced folding efficiency through formation of an intermediate." Proc Natl Acad Sci U S A. 2005; 102(46): 16650-5. PMID: 16269542
 
Newton CH, Shimmin LC, Yee J, Dennis PP. "A family of genes encode the multiple forms of the Saccharomyces cerevisiae ribosomal proteins equivalent to the Escherichia coli L12 protein and a single form of the L10-equivalent ribosomal protein." J Bacteriol. 1990; 172(2): 579-588. PMID: 2404943
 
Neyroz P, Zambelli B, Ciurli S. "Intrinsically disordered structure of Bacillus pasteurii UreG as revealed by steady-state and time-resolved fluorescence spectroscopy." Biochemistry. 2006; 45(29): 8918-30. PMID: 16846235 stefano.ciurli@unibo.it
 
Ng JD, Ko TP, McPherson A. "Cloning, expression, and crystallization of jack bean (Canavalia ensiformis) canavalin." Plant Physiol. 1993; 101(3): 713-28. PMID: 8310055
 
Nguyen BD, Abbott KL, Potempa K, Kobor MS, Archambault J, Greenblatt J, Legault P, Omichinski JG. "NMR structure of a complex containing the TFIIF subunit RAP74 and the RNA polymerase II carboxyl-terminal domain phosphatase FCP1." Proc Natl Acad Sci U S A. 2003; 100(10): 5688-93. PMID: 12732728
 
Nguyen HD, Hall CK. "Spontaneous fibril formation by polyalanines; discontinuous molecular dynamics simulations." J Am Chem Soc. 2006; 128(6): 1890-901. PMID: 16464090
 
Nguyen PH, Stock G, Mittag E, Hu CK, Li MS. "Free energy landscape and folding mechanism of a beta-hairpin in explicit water: a replica exchange molecular dynamics study." Proteins. 2005; 61(4): 795-808. PMID: 16240446
 
Nicastro G, Menon RP, Masino L, Knowles PP, McDonald NQ, Pastore A. "The solution structure of the Josephin domain of ataxin-3: structural determinants for molecular recognition." Proc Natl Acad Sci U S A. 2005; 102(30): 10493-8. PMID: 16020535
 
Nicely NI, Kosak J, de Serrano V, Mattos C. "Crystal structures of Ral-GppNHp and Ral-GDP reveal two binding sites that are also present in Ras and Rap." Structure. 2004; 12(11): 2025-36. PMID: 15530367
 
Nicolas O Laliberté JF. "The complete nucleotide sequence of turnip mosaic potyvirus RNA." The Journal of General Virology. 1992; 73(Pt. 11): 2785-93.
 
Nicolas O, Laliberté JF. "The complete nucleotide sequence of turnip mosaic potyvirus RNA." J Gen Virol. 1992; 73(11): 2785-93. PMID: 1431807
 
Nicolet Y, Piras C, Legrand P, Hatchikian CE, Fontecilla-Camps JC. "Desulfovibrio desulfuricans iron hydrogenase: the structure shows unusual coordination to an active site Fe binuclear center." Structure Fold Des. 1999; 7(1): 13-23. PMID: 10368269
 
Nicoll AJ, Weston CJ, Cureton C, Ludwig C, Dancea F, Spencer N, Smart OS, Gunther UL, Allemann RK. "De novo design of a stable N-terminal helical foldamer." Org Biomol Chem. 2005; 3(24): 4310-5. PMID: 16327890
 
Nielbo S, Thomsen JK, Graversen JH, Jensen PH, Etzerodt M, Poulsen FM, Thogersen HC. "Structure of the plasminogen kringle 4 binding calcium-free form of the C-type lectin-like domain of tetranectin." Biochemistry. 2004; 43(27): 8636-8643. PMID: 15236571
 
Nielsen BB, Kauppi B, Thelander M, Thelander L, Larsen IK, Eklund H. "Crystallization and crystallographic investigations of the small subunit of mouse ribonucleotide reductase." FEBS Lett. 1995; 373(3): 310-2. PMID: 7589490
 
Nielsen MS, Vorum H, Lindersson E, Jensen PH. "Ca2+ binding to alpha-synuclein regulates ligand binding and oligomerization." J Biol Chem. 2001; 276(25): 22680-22684. PMID: 11312271
 
Nielsen, M. S. Vorum, H. Lindersson, E. Jensen, P. H. "Ca2+ binding to alpha-synuclein regulates ligand binding and oligomerization." J Biol Chem. 2001; 276(25): 22680-22684. PMID: 11312271
 
Nilsson N, Malmborg AC, Borrebaeck CA. "The phage infection process: a functional role for the distal linker region of bacteriophage protein 3." J Virol. 2000; 74(9): 4229-35. PMID: 10756036
 
Nimmo GA, Cohen P. "The regulation of glycogen metabolism. Purification and characterisation of protein phosphatase inhibitor-1 from rabbit skeletal muscle." Eur J Biochem. 1978; 87(2): 341-51. PMID: 208844
 
Nishimura C, Dyson HJ, Wright PE. "Identification of native and non-native structure in kinetic folding intermediates of apomyoglobin." J Mol Biol. 2006; 355(1): 139-56. PMID: 16300787
 
Nishimura C, Uversky VN, Fink AL. "Effect of salts on the stability and folding of staphylococcal nuclease." Biochemistry. 2001; 40(7): 2113-28. PMID: 11329280
 
Nishino T, Tsushima K. "Purification of highly active milk xanthine oxidase by affinity chromatography on Sepharose 4B/folate gel." FEBS Lett. 1981; 131(2): 369-72. PMID: 6895359
 
Nishio K, Morimoto Y, Ishizuka M, Ogasahara K, Tsukihara T, Yutani K. "Conformational changes in the alpha-subunit coupled to binding of the beta 2-subunit of tryptophan synthase from Escherichia coli: crystal structure of the tryptophan synthase alpha-subunit alone." Biochemistry. 2005; 44(4): 1184-92. PMID: 15667212
 
Nishio M, Tsurudome M, Kawano M, Watanabe N, Ohgimoto S, Ito M, Komada H, Ito Y. "Interaction between nucleocapsid protein (NP) and phosphoprotein (P) of human parainfluenza virus type 2: one of the two NP binding sites on P is essential for granule formation." J Gen Virol. 1996; 77(Pt 10): 2457-63. PMID: 8887478
 
Nixon RA, Lewis SE. "Differential turnover of phosphate groups on neurofilament subunits in mammalian neurons in vivo." J Biol Chem. 1986; 261(35): 16298-301. PMID: 3782120
 
Noam Adir and Rina Anati. "Crystallization of dimers of the manganese-stabilizing protein of Photosystem II." Photosynthesis Research. 2000; 64: 167-177.
 
Nobe M, Kuroda N, Dobashi T, Yamamoto T, Konno A, Nakata M. "Molecular weight effect on liquid crystalline gel formation of curdlan." Biomacromolecules. 2005; 6(6): 3373-9. PMID: 16283768
 
Noda A, Ning Y, Venable SF, Pereira-Smith OM, Smith JR. "Cloning of senescent cell-derived inhibitors of DNA synthesis using an expression screen." Exp Cell Res. 1994; 211(1): 90-8. PMID: 8125163
 
Nogales E, Wolf SG, Downing KH. "Structure of the alpha beta tubulin dimer by electron crystallography." Nature. 1998; 391(6663): 199-203. PMID: 9428769
 
Nord J, Nyman P, Larsson G, Drakenberg T. "The C-terminus of dUTPase: observation on flexibility using NMR." FEBS Lett. 2001; 492(3): 228-32. PMID: 11257499
 
Norman AW, Adams D, Collins ED, Okamura WH, Fletterick RJ. "Three-dimensional model of the ligand binding domain of the nuclear receptor for 1alpha,25-dihydroxy-vitamin D(3)." J Cell Biochem. 1999; 74(3): 323-333. PMID: 10412035
 
Nyarko A, Hare M, Hays TS, Barbar E. "The intermediate chain of cytoplasmic dynein is partially disordered and gains structure upon binding to light-chain LC8." Biochemistry. 2004; 43(49): 15595-603. PMID: 15581372
 
Nyarko A, Hare M, Hays TS, Barbar E. "The intermediate chain of cytoplasmic dynein is partially disordered and gains structure upon binding to light-chain LC8." Biochemistry. 2004; 43(49): 15595-603.. PMID: 15581372 barbare@science.oregonstate.edu
 
 
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