Bibliography

This bibliography includes all the papers referenced by DisProt, papers that have cited several key references on disordered proteins, and additional papers found by key word searches. The list is sorted by the first author's last name. Click here to see the distribution per year of the papers in the bibliography.
Last update on June 23rd, 2006. Total number of papers in this bibliography: 2430.

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F

Fabry CM, Rosa-Calatrava M, Conway JF, Zubieta C, Cusack S, Ruigrok RW, Schoehn G. "A quasi-atomic model of human adenovirus type 5 capsid." Embo J. 2005; 24(9): 1645-54. PMID: 15861131
 
Fang JY, Chen JP, Leu YL, Wang HY. "Characterization and evaluation of silk protein hydrogels for drug delivery." Chem Pharm Bull (Tokyo). 2006; 54(2): 156-62. PMID: 16462057
 
Fan S, Wei Z, Xu H, Gong W. "Crystal structure of human synbindin reveals two conformations of longin domain." ; 2008. PMID: 18466758
 
Farabaugh PJ. "Sequence of the lacI gene." Nature. 1978; 274(5673): 765-9. PMID: 355891
 
Fares C, Libich DS, Harauz G. "Solution NMR structure of an immunodominant epitope of myelin basic protein. Conformational dependence on environment of an intrinsically unstructured protein." Febs J. 2006; 273(3): 601-14. PMID: 16420483 gharauz@uoguelph.ca
 
Fares C, Libich DS, Harauz G. "Solution NMR structure of an immunodominant epitope of myelin basic protein." Febs J. 2006; 273(3): 601-14. PMID: 16420483
 
Farkas A, Tompa P, Schad E, Sinka R, Jekely G, Friedrich P. "Autolytic activation and localization in Schneider cells (S2) of calpain B from Drosophila." Biochem J. 2004; 378(Pt 2): 299-305. PMID: 14614768
 
Farooq A, Zeng L, Yan KS, Ravichandran KS, Zhou MM. "Coupling of folding and binding in the PTB domain of the signaling protein Shc." Structure (Camb). 2003; 11(8): 905-13. PMID: 12906822
 
Farreyrol K, Pearson MN, Grisoni M, Cohen D, Beck D. "Vanilla mosaic virus isolates from French Polynesia and the Cook Islands are Dasheen mosaic virus strains that exclusively infect vanilla." Arch Virol. 2006; 151(5): 905-19. PMID: 16421638
 
Fasshauer D, Antonin W, Margittai M, Pabst S, Jahn R. "Mixed and non-cognate SNARE complexes. Characterization of assembly and biophysical properties." J Biol Chem. 1999; 274(22): 15440-15446. PMID: 10336434
 
Fasshauer D, Eliason WK, Brunger AT, Jahn R. "Identification of a minimal core of the synaptic SNARE complex sufficient for reversible assembly and disassembly." Biochemistry. 1998; 37(29): 10354-10362. PMID: 9671503
 
Fasshauer, D. Eliason, W. K. Brunger, A. T. Jahn, R. "Identification of a minimal core of the synaptic SNARE complex sufficient for reversible assembly and disassembly." Biochemistry. 1998; 37(29): 10354-10362. PMID: 9671503
 
Fasshauer D, Otto H, Eliason WK, Jahn R, Brunger AT. "Structural changes are associated with soluble N-ethylmaleimide-sensitive fusion protein attachment protein receptor complex formation." J Biol Chem. 1997; 272(44): 28036-28041. PMID: 9346956 brunger@stanford.edu
 
Favrin G, Irback A, Wallin S. "Sequence-based study of two related proteins with different folding behaviors." Proteins. 2004; 54(1): 8-12. PMID: 14705019
 
Feldkamp U, Schroeder H, Niemeyer CM. "Design and evaluation of single-stranded DNA carrier molecules for DNA-directed assembly." J Biomol Struct Dyn. 2006; 23(6): 657-66. PMID: 16615811
 
Felix NJ, Suri A, Walters JJ, Horvath S, Gross ML, Allen PM. "I-Ep-bound self-peptides: identification, characterization, and role in alloreactivity." J Immunol. 2006; 176(2): 1062-71. PMID: 16393994
 
Felmlee T, Pellett S, Welch RA. "Nucleotide sequence of an Escherichia coli chromosomal hemolysin." J Bacteriol. 1985; 163(1): 94-105. PMID: 3891743
 
Fernandes F, Loura L, Koehorst RB, Dixon N, Kee TP, Hemminga MA, Prieto M. "Interaction of the indole class of vacuolar H(+)-ATPase inhibitors with lipid bilayers." Biochemistry. 2006; 45(16): 5271-9. PMID: 16618115
 
Fernandez I, Ubach J, Dulubova I, Zhang X, Sudhof TC, Rizo J. "Three-dimensional structure of an evolutionarily conserved N-terminal domain of syntaxin 1A." Cell. 1998; 94(6): 841-849. PMID: 9753330
 
Ferraz RM, Aris A, Villaverde A. "Enhanced molecular recognition signal in allosteric biosensing by proper substrate selection." Biotechnol Bioeng. 2006; 94(1): 193-9. PMID: 16538674
 
Ferre-D'Amare AR, Pognonec P, Roeder RG, Burley SK. "Structure and function of the b/HLH/Z domain of USF." Embo J. 1994; 13(1): 180-9. PMID: 8306960
 
Ferreiro DU, de Prat-Gay G. "A protein-DNA binding mechanism proceeds through multi-state or two-state parallel pathways." J Mol Biol. 2003; 331(1): 89-99. PMID: 12875838
 
Ferro-Flores G, Torres-Garcia E, Garcia-Pedroza L, Arteaga de Murphy C, Pedraza-Lopez M, Garnica-Garza H. "An efficient, reproducible and fast preparation of 188Re-anti-CD20 for the treatment of non-Hodgkin's lymphoma." Nucl Med Commun. 2005; 26(9): 793-9. PMID: 16096583
 
Ferron F, Rancurel C, Longhi S, Cambillau C, Henrissat B, Canard B. "VaZyMolO: a tool to define and classify modularity in viral proteins." J Gen Virol. 2005; 86(Pt 3): 743-9. PMID: 15722535
 
Fieber W, Kragelund BB, Meldal M, Poulsen FM. "Reversible dimerization of acid-denatured ACBP controlled by helix A4." Biochemistry. 2005; 44(5): 1375-84. PMID: 15683223
 
Fiebig KM, Rice LM, Pollock E, Brunger AT. "Folding intermediates of SNARE complex assembly." Nat Struct Biol. 1999; 6(2): 117-23. PMID: 10048921 brunger@stanford.edu
 
Fiegen D, Haeusler LC, Blumenstein L, Herbrand U, Dvorsky R, Vetter IR, Ahmadian MR. "Alternative splicing of Rac1 generates Rac1b, a self-activating GTPase." J Biol Chem. 2004; 279(6): 4743-9. PMID: 14625275
 
Figueras i Ventura RM, Vandergheynst P, Frossard P. "Low-rate and flexible image coding with redundant representations." IEEE Trans Image Process. 2006; 15(3): 726-39. PMID: 16519358
 
Fillingham, Ian et. al., Gingras, R. Alexandre, et. al., Papagrigoriou, Evangelos, et. al., Patel, Bipin, et. al., Emsley, Jonas, et. al. Critchley, R. David, et. al., Roberts, C.K. Gordon, et. al., Barsukov, L. Igor. "A Vinculin Binding Domain from the Talin Rod Unfolds to Form a Complex with the Vinculin Head." Structure. 2005; 13: 65-74. PMID: 15642262
 
Fillingham I, et. al., Gingras AR, et. al., Papagrigoriou E, et. al., Patel B, et. al., Emsley J, et. al., Critchley DR, et. al., Roberts GC, et. al., Barsukov IL. "A vinculin binding domain from the talin rod unfolds to form a complex with the vinculin head." Structure. 2005; 13: 65-74. PMID: 15642262
 
Fink AL. "Natively unfolded proteins." Curr Opin Struct Biol. 2005; 15(1): 35-41. PMID: 15718131
 
Fink AL, Calciano LJ, Goto Y, Kurotsu T, Palleros DR. "Classification of acid denaturation of proteins: intermediates and unfolded states." Biochemistry. 1994; 33(41): 12504-12511. PMID: 7918473
 
Finney NS. "Combinatorial discovery of fluorophores and fluorescent probes." Curr Opin Chem Biol. 2006; 10(3): 238-45. PMID: 16679045
 
Fiorin G, Biekofsky RR, Pastore A, Carloni P. "Unwinding the helical linker of calcium-loaded calmodulin: a molecular dynamics study." Proteins. 2005; 61(4): 829-39. PMID: 16193483
 
Firczuk M, Mucha A, Bochtler M. "Crystal Structures of Active LytM." J Mol Biol. 2005. PMID: 16269153
 
Fischer D, Geyer A. "NMR spectroscopic characterization of the membrane affinity of polyols." Magn Reson Chem. 2005; 43(11): 893-901. PMID: 16142831
 
Fischer RS, Fowler VM. "Tropomodulins: life at the slow end." Trends Cell Biol. 2003; 13(11): 593-601. PMID: 14573353
 
Fisher LW, Torchia DA, Fohr B, Young MF, Fedarko NS. "Flexible structures of SIBLING proteins, bone sialoprotein, and osteopontin." Biochem Biophys Res Commun. 2001; 280(2): 460-5. PMID: 11162539 lfisher@dir.nidcr.nih.gov
 
Fitzgerald PA, Davey TW, Warr GG. "Micellar structure in gemini nonionic surfactants from small-angle neutron scattering." Langmuir. 2005; 21(16): 7121-8. PMID: 16042432
 
Fitzkee NC, Rose GD. "Sterics and solvation winnow accessible conformational space for unfolded proteins." J Mol Biol. 2005; 353(4): 873-87. PMID: 16185713
 
Fladvad M, Zhou K, Moshref A, Pursglove S, Safsten P, Sunnerhagen M. "N and C-terminal sub-regions in the c-Myc transactivation region and their joint role in creating versatility in folding and binding." J Mol Biol. 2005; 346(1): 175-89. PMID: 15663936
 
Flaugh SL, Lumb KJ. "Effects of macromolecular crowding on the intrinsically disordered proteins c-Fos and p27(Kip1)." Biomacromolecules. 2001; 2(2): 538-540. PMID: 11749217
 
Fletcher CM, McGuire AM, Gingras AC, Li H, Matsuo H, Sonenberg N, Wagner G. "4E binding proteins inhibit the translation factor eIF4E without folded structure." Biochemistry. 1998; 37(1): 9-15. PMID: 9453748
 
Fletcher CM, Wagner G. "The interaction of eIF4E with 4E-BP1 is an induced fit to a completely disordered protein." Protein Sci. 1998; 7(7): 1639-42. PMID: 9684899
 
Flockhart I, Booker M, Kiger A, Boutros M, Armknecht S, Ramadan N, Richardson K, Xu A, Perrimon N, Mathey-Prevot B. "FlyRNAi: the Drosophila RNAi screening center database." Nucleic Acids Res. 2006; 34(Database issue): D489-94. PMID: 16381918
 
Flower TR, Chesnokova LS, Froelich CA, Dixon C, Witt SN. "Heat shock prevents alpha-synuclein-induced apoptosis in a yeast model of Parkinson's disease." J Mol Biol. 2005; 351(5): 1081-100. PMID: 16051265
 
Focia PJ, Craig SP 3rd, Eakin AE. "Approaching the transition state in the crystal structure of a phosphoribosyltransferase." Biochemistry. 1998; 37(49): 17120-17127. PMID: 9860824
 
Focia PJ, Craig SP 3rd, Nieves-Alicea R, Fletterick RJ, Eakin AE. "A 1.4 A crystal structure for the hypoxanthine phosphoribosyltransferase of Trypanosoma cruzi." Biochemistry. 1998; 37(43): 15066-15075. PMID: 9790669
 
Foettinger A, Leitner A, Lindner W. "Solid-phase capture and release of arginine peptides by selective tagging and boronate affinity chromatography." J Chromatogr A. 2005; 1079(1-2): 187-96. PMID: 16038304
 
Folkers PJ, Clore GM, Driscoll PC, Dodt J, Kohler S, Gronenborn AM. "Solution structure of recombinant hirudin and the Lys-47----Glu mutant: a nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing study." Biochemistry. 1989; 28(6): 2601-17. PMID: 2567183
 
Folk P, Puta F, Skruzny M. "Transcriptional coregulator SNW/SKIP: the concealed tie of dissimilar pathways." Cell Mol Life Sci. 2004; 61(6): 629-40. PMID: 15052407
 
Fontana A, de Laureto PP, Spolaore B, Frare E, Picotti P, Zambonin M. "Probing protein structure by limited proteolysis." Acta Biochim Pol. 2004; 51(2): 299-321. PMID: 15218531
 
Forsee WT, Cartee RT, Yother J. "Role of the carbohydrate binding site of the Streptococcus pneumoniae capsular polysaccharide type 3 synthase in the transition from oligosaccharide to polysaccharide synthesis." J Biol Chem. 2006. PMID: 16410247
 
Fossen T, Wray V, Bruns K, Rachmat J, Henklein P, Tessmer U, Maczurek A, Klinger P, Schubert U. "Solution structure of the human immunodeficiency virus type 1 p6 protein." J Biol Chem. 2005. PMID: 16234236
 
Foulkes JG, Cohen P. "The regulation of glycogen metabolism. Purification and properties of protein phosphatase inhibitor-2 from rabbit skeletal muscle." Eur J Biochem. 1980; 105(1): 195-203. PMID: 6245879
 
Fox KR, Brown T. "An extra dimension in nucleic acid sequence recognition." Q Rev Biophys. 2006: 1-10. PMID: 16737560
 
Francis Shaw B, Durazo A, Nersissian AM, Whitelegge JP, Faull KF, Selverstone Valentine J. "Local unfolding in a destabilized, pathogenic variant of superoxide dismutase 1 observed with H/D exchange and mass spectrometry." J Biol Chem. 2006. PMID: 16644738
 
Freddi G, Anghileri A, Sampaio S, Buchert J, Monti P, Taddei P. "Tyrosinase-catalyzed modification of Bombyx mori silk fibroin: Grafting of chitosan under heterogeneous reaction conditions." J Biotechnol. 2006. PMID: 16621091
 
Frenal K, Callebaut I, Wecker K, Prochnicka-Chalufour A, Dendouga N, Zinn-Justin S, Delepierre M, Tomavo S, Wolff N. "Structural and Functional Characterization of the TgDRE Multidomain Protein, a DNA Repair Enzyme from Toxoplasma gondii." Biochemistry. 2006; 45(15): 4867-4874. PMID: 16605254
 
Friedrich P. "The intriguing Ca2+ requirement of calpain activation." Biochem Biophys Res Commun. 2004; 323(4): 1131-3. PMID: 15451413
 
Friedrich P, Bozoky Z. "Digestive versus regulatory proteases: on calpain action in vivo." Biol Chem. 2005; 386(7): 609-12. PMID: 16207081
 
Friedrich P, Tompa P, Farkas A. "The calpain-system of Drosophila melanogaster: coming of age." Bioessays. 2004; 26(10): 1088-96. PMID: 15382138
 
Fritsche E, Humm A, Huber R. "Substrate binding and catalysis by L-arginine:glycine amidinotransferase--a mutagenesis and crystallographic study." Eur J Biochem. 1997; 247(2): 483-90. PMID: 9266688
 
Frohlich RF, Andersen FF, Westergaard O, Andersen AH, Knudsen BR. "Regions within the N-terminal domain of human topoisomerase I exert important functions during strand rotation and DNA binding." J Mol Biol. 2004; 336(1): 93-103. PMID: 14741206
 
Frontera A, Saczewski F, Gdaniec M, Dziemidowicz-Borys E, Kurland A, Deya PM, Quinonero D, Garau C. "Anion-pi interactions in cyanuric acids: a combined crystallographic and computational study." Chemistry. 2005; 11(22): 6560-7. PMID: 16100737
 
Fuchs PF, Bonvin A, Bochicchio B, Pepe A, Alix AJ, Tamburro AM. "Kinetics and thermodynamics of type VIII {beta}-turn formation: a CD, NMR and microsecond explicit molecular dynamics study of the GDNP tetrapeptide." Biophys J. 2006. PMID: 16443656
 
Fuchs PF, Bonvin AM, Bochicchio B, Pepe A, Alix AJ, Tamburro AM. "Kinetics and thermodynamics of type VIII beta-turn formation: a CD, NMR, and microsecond explicit molecular dynamics study of the GDNP tetrapeptide." Biophys J. 2006; 90(8): 2745-59. PMID: 16443656
 
Fu C, Li J, Ma S. "Efficient two-step synthesis of 3-halo-3-enals or 2-halo-2-alkenyl ketones from propargylic bromides via a unique cationic 1,2-aryl or proton shift in electrophilic addition reaction of 2,3-allenols with X+." Chem Commun (Camb). 2005: 4119-21. PMID: 16091819
 
Fuh G, Mulkerrin MG, Bass S, McFarland N, Brochier M, Bourell JH, Light DR, Wells JA. "The human growth hormone receptor. Secretion from Escherichia coli and disulfide bonding pattern of the extracellular binding domain." J Biol Chem. 1990; 265(6): 3111-3115. PMID: 2406245
 
Fujinaga M, Berthet-Colominas C, Yaremchuk AD, Tukalo MA, Cusack S. "Refined crystal structure of the seryl-tRNA synthetase from Thermus thermophilus at 2.5 A resolution." J Mol Biol. 1993; 234(1): 222-33. PMID: 8230201
 
Furrie E, Macfarlane S, Thomson G, Macfarlane GT. "Toll-like receptors-2, -3 and -4 expression patterns on human colon and their regulation by mucosal-associated bacteria." Immunology. 2005; 115(4): 565-74. PMID: 16011525
 
Fuxreiter M, Simon I, Friedrich P, Tompa P. "Preformed structural elements feature in partner recognition by intrinsically unstructured proteins." J Mol Biol. 2004; 338(5): 1015-26. PMID: 15111064
 
Fyffe SA, Alphey MS, Buetow L, Smith TK, Ferguson MA, Sorensen MD, Bjorkling F, Hunter WN. "Recombinant Human PPAR-beta/delta Ligand-binding Domain is Locked in an Activated Conformation by Endogenous Fatty Acids." J Mol Biol. 2006; 356(4): 1005-13. PMID: 16405912
 
 
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